PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000863.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 269aa    MW: 30298.8 Da    PI: 9.9135
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000863.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-20123171355
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              y+GVr+++ +g+W+AeIrdp+    +  r++lg+f taeeAa+a+++a+ +++g
  Itr_sc000863.1_g00008.1 123 YRGVRQRP-WGKWAAEIRDPR----KaVRVWLGTFKTAEEAARAYDRAAIEFRG 171
                              9*******.**********94....36************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.82E-34122178No hitNo description
PfamPF008474.7E-14122171IPR001471AP2/ERF domain
SMARTSM003802.6E-38122185IPR001471AP2/ERF domain
PROSITE profilePS5103224.816122179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-32122179IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-22122179IPR016177DNA-binding domain
PRINTSPR003675.9E-12123134IPR001471AP2/ERF domain
PRINTSPR003675.9E-12145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MQWSTQILPP EPFSPSPHPP LTAAHQEFSV MVSALQNVMN GGDANFDSQS RFSSFSAPAS  60
TTTSPQTAFK GFAELPPLQD TCQLCKYEGC LGCNFFAAPD AHQMAKKKKS NAVVMKRKKK  120
NNYRGVRQRP WGKWAAEIRD PRKAVRVWLG TFKTAEEAAR AYDRAAIEFR GPRAKLNFSF  180
ADYTNITTVS ATTLKTNTKT RHKYDKSPSS SSSVSQQPRQ QVVQENSDHE TNWSAPAKME  240
MRNGDEEFQE WMRMLMDFND VSSXXXXXG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22119178262ATERF1
3gcc_A2e-22119178262ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105119KKKKSNAVVMKRKKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9SZ063e-40EF109_ARATH; Ethylene-responsive transcription factor ERF109
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-36redox responsive transcription factor 1